Compare fares, departure times, stops and baggage details for this route, then open the full search when you are ready to check current availability and complete booking.
MNLBKISat, 03 Oct
Fare checked before payment No hidden charges Transparent cancellation policy 24×7 booking support
Lowest fare₱15,042Chinasouthern
Fastest4h 15mgate to gate
Options found58flights on this route
Find your flightMNL → BKI
Available Flights & Fares
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Prices in PHP
58 flight options
Fares are checked again before payment.
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Night
00:00-05:59
₱18,389Hong Kong Express Airways at 01:45Morning
06:00-11:59
₱15,042Chinasouthern at 11:55Afternoon
12:00-17:59
₱16,097Royal Brunei Airlines at 15:00Evening
18:00-23:59
₱15,941JEJU AIR at 23:20
Departure & Arrival Airport Details
Manila (MNL)
Ninoy Aquino Intl
Philippines
GMT 8
Latitude: 14.5086
Longitude: 121.019997
Kota Kinabalu (BKI)
Kota Kinabalu
Malaysia
GMT 8
Latitude: 5.9372100830078125
Longitude: 116.0510025024414
Distance: Manila (MNL), Philippines to Kota Kinabalu (BKI), Malaysia - 1,097.02 km
Flights shown for 03 Oct 2026. View all flights opens the complete search result.
Fares and hotel rates usually run higher around these dates. Booking earlier — or shifting a day or two — often costs less.
Busiest periods: Year-end peak (01 Dec – 05 Jan).
16SepMalaysia DayWednesday · in 5 daysPeak
25DecChristmas DayFriday · in 105 days
01JanNew Year's DayFriday · in 112 days
Fixed-date national holidays. Festivals that follow the lunar calendar shift each year and are not listed here — check the exact date for your travel year.
Compare your journey
How to travel Manila to Kota Kinabalu
Every option we can actually book for you, compared on price and journey time.
OptionFromJourney timeAvailability
Connecting flight₹22,944Longer — includes a stop58 options
Air distance is about 1,097 km. 10 airlines operate this route.
Road distance and coach duration are approximate estimates from the air distance, not a timetable.
Airlines flying from Manila to Kota Kinabalu
Compare fares, stops, baggage and refundability across the airlines flying this route.
MA
Malaysia Airlines Flights
from ₱19,25819 flights
Fares from
₱19,258
Non-stop
None in these results
Departures
19 — compare timings in the list above
SI
Singapore Airlines Flights
from ₱23,48913 flights
Fares from
₱23,489
Non-stop
None in these results
Departures
13 — compare timings in the list above
CA
Cathay Pacific Flights
from ₱16,1028 flights
Fares from
₱16,102
Non-stop
None in these results
Departures
8 — compare timings in the list above
CH
Chinasouthern Flights
from ₱15,0427 flights
Fares from
₱15,042
Non-stop
None in these results
Departures
7 — compare timings in the list above
SC
Scoot Flights
from ₱19,7653 flights
Fares from
₱19,765
Non-stop
None in these results
Departures
3 — compare timings in the list above
Route Overview & Flight Facts
Fastest flight duration
4h 15m · Royal Brunei Airlines
First departure of the day
00:15 · Malaysia Airlines
Last departure of the day
23:20 · JEJU AIR
Options in this snapshot
58
Airport codes
Manila–MNL, Kota Kinabalu–BKI
Fares and timings are indicative — the exact price is confirmed with the airline when you search.
Flight Schedule, Timings & Airfare Insights
Daily Flight Schedule & Travel Duration
Around 58 flights appear in the dated route snapshot. Departures run through the day — the first flight leaves around 00:15 and the last around 23:20. The fastest flight takes about 4h 15m.
Morning vs Evening Departure Fares
Lowest fare by departure window: Morning from ₱15,042, Evening from ₱15,941, Afternoon from ₱16,097, Night from ₱18,389. These observations do not predict the cheapest departure window on other dates.
Cheapest Airfare & Best Time to Book
Search your travel dates to compare current fares — prices update continuously with airline inventory.
One-Way vs Round-Trip Fare Comparison
Compare the complete cost and conditions of both options for your dates. A round-trip can have different fare and change rules from two one-way tickets. One booking may contain multiple airline PNRs; confirm baggage transfer and connection protection for separate tickets.
Online Web Check-In & Boarding Pass
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How to Book Cheap Flights on FlyX
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2
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5
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Why Book Your Flight with FlyX?
Compare the available Manila to Kota Kinabalu options by total price, stops, baggage and fare conditions. Search your dates for current availability, then review traveller details and the final price before paying.
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Frequently Asked Questions
Is it worth booking Manila to Kota Kinabalu flights in advance?
There is no guaranteed cheapest booking window. Compare your planned dates early, check nearby dates and consider baggage, connection time and change conditions as well as price. Across the dates currently loaded for Manila to Kota Kinabalu, Saturday shows the lowest fare at ₱15,042. That is an observed snapshot for these dates, not a rule that holds every week.
How far is Manila from Kota Kinabalu by air?
The direct air distance between Manila (MNL) and Kota Kinabalu (BKI) is about 1,097 km. Actual flight time varies with the routing the airline files and with winds on the day.
Are there non-stop flights from MNL to BKI?
Not for the dates currently loaded - every Manila to Kota Kinabalu option showing right now has at least one stop. Non-stop service can differ by season and by day, so it is worth checking nearby dates before you decide.
Which airlines fly Manila to Kota Kinabalu?
Malaysia Airlines, Singapore Airlines, Cathay Pacific, Chinasouthern and 1 other are showing on this route for the dates currently loaded. Fares, baggage allowance and refund rules differ by airline and by fare type, so compare the fare conditions and not only the headline price.
How long is the flight from Manila to Kota Kinabalu?
Every option currently loaded has at least one stop, and the shortest total journey time is about 4h 15m including the layover. Non-stop service on this route can vary by season and by day.
What is the baggage allowance on Manila to Kota Kinabalu flights?
Allowance is set by the airline and the fare you pick, not by the route. Fares showing right now include 1 Pieces, 15 KG and 30 KG. Cabin baggage is counted separately, and the exact allowance for the fare you choose is shown in the fare conditions before payment.
What is the cheapest Manila to Kota Kinabalu flight fare?
The lowest fare showing on Manila to Kota Kinabalu for the dates currently loaded is ₱15,042. Fares on the same dates run up to ₱51,566, depending on airline, timing and fare type. Airline pricing moves continuously, so treat this as a dated observation rather than a fixed price.
What time do Manila to Kota Kinabalu flights depart?
For the dates currently loaded the first departure is around 00:15 and the last is around 23:20, local time at Manila. Use the departure-time filter on the results above to narrow to a morning, afternoon or evening slot.
Why does the price change after clicking Book Now?
Airline seat inventory and fares change continuously. Selecting Book Now runs a live fare verification with the airline so the price you approve is the price you pay - if it has moved, you see the new figure before any payment.
Before you book this route
Check the airport codes MNL–BKI, local departure and arrival dates, and every connecting airport. Connections can have different document and baggage requirements from your final destination.
Where these fares come from
The fares, durations, stops and baggage shown here come from real airline search results for this route. They are examples for the dates on this page, not a full timetable and not a locked price — run a search to see what is available for your own dates.
Last checked .
Check official travel requirements
Confirm passport, visa and transit rules for your nationality and full itinerary with the relevant government and operating airline. IATA travel-document information explains why requirements vary.
The MNL to BKI cards above show selected flight options. Airline prices and seat availability can move quickly, so the final fare is rechecked in the booking flow.
Approx route distance: 1,097.02 km.
Before you book
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Lowest Manila to Kota Kinabalu airfare today, in 30 days and in 90 days
Cheapest Fare
Fare
Date
Airline
Departure
Lowest Airfare Today
₱15,042
03/10/2026
Chinasouthern
11:55
Cheapest Airfare Within 30 Days
₱14,741
11/10/2026
Chinasouthern
11:55
Cheapest Airfare Within 90 Days
₱14,290
10/12/2026
Chinasouthern
11:55
Book Manila to Kota Kinabalu Flight Tickets on FlyX
Planning to fly from Manila to Kota Kinabalu? FlyX lets you compare flight rates, airline timings, layovers, and baggage allowances all in one simple list. From quick non-stop routes to flexible connecting options, finding and booking cheap air tickets has never been easier.
Manila to Kota Kinabalu Flight Distance, Duration and Time
The aerial distance between Manila and Kota Kinabalu is approximately 1,097 KM. The flight duration ranges from 4H :15 M up to 38H :15 M depending on whether you book a non-stop flight or a connecting schedule with layovers.
Manila to Kota Kinabalu Flight Schedule and Timing
Around 58 flights operate on this route, providing plenty of choices for your travel window. The earliest morning flight departs from Manila at 00:15, while the last night flight leaves at 23:20. Flights depart from Ninoy Aquino Intl and land at Kota Kinabalu.
Flight Route Details & Analysis
Flight Details
Information
Route
Manila to Kota Kinabalu
Aerial Distance
1,097 KM
Flight Duration
4H :15 M - 38H :15 M
Airport Codes
Manila - MNL, Kota Kinabalu - BKI
Total Flights Available
58 flights (0 direct)
First Flight Departure
Departs at 00:15
Last Flight Departure
Departs at 23:20
Early Morning Flights (12 AM - 8 AM)
27 direct/indirect flights
Morning Flights (8 AM - 12 PM)
6 direct/indirect flights
Afternoon Flights (12 PM - 4 PM)
14 direct/indirect flights
Evening Flights (4 PM - 8 PM)
8 direct/indirect flights
Night Flights (8 PM - 12 AM)
3 direct/indirect flights
Airport Information & Terminals
MNL: Manila airport. Airport access in Manila depends on arrival time, terminal, hotel location and local traffic. Confirm the airport name on the ticket, then choose between official taxi, app cab, airport bus, rail or hotel transfer based on luggage and time of day.
BKI: Kota Kinabalu airport. Kota Kinabalu airport may offer metro, rail, bus and taxi options. Choose public transport for daytime light-luggage arrivals; choose a cab or hotel transfer for family trips and late landings.
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Ninoy Aquino Intl
Kota Kinabalu
